METHODS FOR THE PROTEIN ENGINEERING
Stampa
Enrollment year
2021/2022
Academic year
2021/2022
Regulations
DM270
Academic discipline
BIO/11 (MOLECULAR BIOLOGY)
Department
DEPARTMENT OF BIOLOGY AND BIOTECHNOLOGY "LAZZARO SPALLANZANI"
Course
ADVANCED BIOTECHNOLOGY
Curriculum
PERCORSO COMUNE
Year of study
Period
2nd semester (01/03/2022 - 14/06/2022)
ECTS
6
Lesson hours
48 lesson hours
Language
Italian
Activity type
ORAL TEST
Teacher
BINDA CLAUDIA (titolare) - 6 ECTS
Prerequisites
The course deals with topics and methods of Molecular Biology and Biochemistry at advanced level. Therefore, a basic knowledge of these subjects is fundamental.
Learning outcomes
In-depth knowledge of proteins and macromolecular complexes which are at the basis of the biological processes, with special focus on the methods for the biochemical and structural characterization of biomolecules and their biotechnology applications.
Course contents
In particular, the course will comprise the following topics:
Biological function of proteins and their chemical properties. Protein structure: primary, secondary, tertiary, quaternary structure. The problem of the mechanism of protein folding. Role of chaperones. Peculiar cases of folding: eukaryotic proteins, membrane proteins, intrinsically disordered proteins. Biotechnology applications of studying protein structure: analysis of protein-protein interactions and protein-ligand, biocatalysis and enzymes for industrial interest, drug design. Production of recombinant proteins for structural biology. Protein purification by advanced chromatographic methods, Protein Data Bank (PDB) and bioinformatics tools for protein engineering.

Methods for studying the structure of macromolecules. Nuclear Magnetic Resonance (NMR): the magnetic spin moment, the Larmor frequency and the resonance conditions; 1D NMR spectra and multidimensional NMR; examples of structures determined with NMR. X-ray crystallography: crystallization of macromolecules and properties of crystals; theory of X-ray diffraction and experimental methods for data collection; amplitude and phase of diffracted rays and structure factors; analysis of the electron density map and modelling of protein polypeptide chain; examples of structures solved by X-ray crystallography. Electron microscopy: TEM and SEM; Cryo-EM; sample preparation and negative stain; single-particle EM, 3D reconstruction from 2D projections; examples of structures determined by EM.

Complementary methods for the study of biomolecules and their biotechnological applications: Surface Plasmon Resonance (SPR), Isothermal Titration Calorimetry (ITC), Microscale Thermophoresis
Teaching methods
Lectures possibly integrated with seminars. Interactive teaching methods (like article reading, computer-based tools with real-time feedback etc.) may be used to improve learning and student participation). No practicals in the lab are included.
Reccomended or required readings
“Physical Biochemistry: principles and applications”, David Sheehan, Wiley-Blackwell – 2nd edition
Assessment methods
Oral exam that will verify the acquired knowledge of the topics but also the quality of presentation and the usage of the correct language and terminology.
Further information
none
Sustainable development goals - Agenda 2030
As this course is on advanced methods for protein engineering, it will include themes relative to the usage of enzymes for industrial biocatalytic applications and green chemistry (objective 12 responsible consumption and production).
The goals